PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0058s0140.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 487aa    MW: 54291.1 Da    PI: 6.4527
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0058s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.88.5e-34221122101
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl k+y++++d++++e++sws+n+nsfvv+++ e+a+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF ++ F k
  SapurV1A.0058s0140.1.p  22 FLIKTYDMVDDSSTDEIVSWSSNKNSFVVWNPPELARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPER---------WEFGNEDFVK 99 
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkk 101
                             ++k+ll++i+r+k
  SapurV1A.0058s0140.1.p 100 DQKHLLKNIHRRK 112
                             ***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.65E-3518111IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.0E-3618111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5718111IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.5E-3022111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-182245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MEPGPSSATS GGGGGGGGPA PFLIKTYDMV DDSSTDEIVS WSSNKNSFVV WNPPELARLL  60
LPTFFKHNNF SSFIRQLNTY GFRKIDPERW EFGNEDFVKD QKHLLKNIHR RKPIHSHSQP  120
QGSLVDPERA AYEKEIDKLS RDKAKLQACI QGFEQQRSSA KLQVEDLTRK IDIMQQRQEK  180
LLSFLEKSVQ NPTFVEHLAR KIEALDFSAY SKKRRLPQVD HSMPIAENSL VENHSSSRPV  240
SNVIHQDFSD KLRLELSPAV SDINLVSQSS NEDGGSPRRK ISEGDLKDAL TRTSGLQVAP  300
ETWELSDTGA SYTFKVNPAV PRDIPANGSP ALHSRQANLT CNEEGDGHIS CQLNLSLASS  360
PLQVNKNPYS ARIPQLGQEI GKSPESRFNE SNKDSDMRAT QNNTNQGSEG RTLSSPQENP  420
NNNQAPASAP VTVNDVFWEQ FLTERPGYSD NEEASSNYRA NPYDERERRI GFGVPRNAKN  480
MEQLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-201311117129Heat shock factor protein 1
5d5v_B1e-201311117129Heat shock factor protein 1
5d5v_D1e-201311117129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139840.0KP013984.1 Populus simonii heat shock transcription factor A5b (HsfA5b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298675.20.0Heat Stress Transcription Factor family protein
SwissprotQ94BZ51e-168HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLB9GFJ00.0B9GFJ0_POPTR; Heat Stress Transcription Factor family protein
STRINGPOPTR_0001s32810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-165HSF family protein